Species,"Baphicacanthus cusia" "Sample Location","medicinal garden for scientific research at the Fujian Agricultural and Forestry University." "Sample Part"," leaf, stem, and root" "Sequencing platform","Illumina HiSeq 4000" "Sequencing data","140,240,688 high quality reads for root, 137,216,248 for leaf and 122,837,394 for stem" "Assembly software",Trinity "Assembly result","63,327,716 bases, 51,381 unigenes and 1,932 bp N50, and average length 1,232 bp were assembled. " "Annotation Method","Nr, Swiss-Prot, KEGG, KOG, COG"