Description
Apium graveolens L. (2n = 2x = 22), a globally important crop, is a popular herb and vegetable. In addition to being an important vegetable, celery has many pharmacologically active compounds, including flavonoids, volatile oils, unsaturated fatty acids and others. It is rich in coumarins and their derivatives, having prominent roles in defending against pathogens and multiple pharmaceutical activities, such as anticoagulation, antibacterial, and anti-inflammatory properties.
- SUMMARY
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Published journals
Plant Biotechnology journal
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Publish date
2020.10
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Sequence Method
PacBio Sequel I, Illumina HiSeq, 10X Genomics
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Assembly Method
FALCON, Quiver
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Genome Size
3,332.57 Mb
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Genome Coverage
232.22X
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Scaffolds
4,863
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Contigs
9,496
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N50
790578
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Data
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Reference url
Reference
Song, X., Sun, P., Yuan, J., Gong, K., Li, N., Meng, F., Zhang, Z., Li, X., Hu, J., Wang, J., Yang, Q., Jiao, B., Nie, F., Liu, T., Chen, W., Feng, S., Pei, Q., Yu, T., Kang, X., Zhao, W., … Wang, X. (2020). The celery genome sequence reveals sequential paleo-polyploidizations, karyotype evolution and resistance gene reduction in apiales. Plant biotechnology journal, 10.1111/pbi.13499. Advance online publication.
- SUMMARY
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Published journals
Horticulture Research
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Publish date
2020.01
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Sequence Method
Illumina
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Assembly
version 1.0
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Assembly Method
SOAPdenovo2
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Genome Size
2372 Mb
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Genome Coverage
188.93x
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Scaffolds
257842
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Contigs
432762
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N50
13108
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GC%
35.35
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Data
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Reference url
Reference
Li, MY., Feng, K., Hou, XL. et al. The genome sequence of celery (Apium graveolens L.), an important leaf vegetable crop rich in apigenin in the Apiaceae family. Hortic Res 7, 9 (2020). https://doi.org/10.1038/s41438-019-0235-2
- SUMMARY
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Sequence Method
Illumina, PacBio
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Assembly
ASM990537v1
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Assembly Method
Canu v.1.8
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Genome Size
3332.58 Mb
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Genome Coverage
101.61x
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Scaffolds
4852
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Contigs
9485
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N50
790578
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GC%
35.7025
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Bioproject
PRJNA593940
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GCA Number
GCA_009905375.1
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Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/905/375/GCA_009905375.1_ASM990537v1/