Description
Panax notoginseng is a perennial upright herb of the genus Panax. P. notoginseng is used as a medicine for its roots. It is warm and spicy, and has significant effects of promoting blood circulation, removing blood stasis, reducing swelling and pain. P. notoginseng is mainly restricted to mountain areas with altitudes of 1200–2000 m around 23.5°N and 104°E in Wenshan Prefecture, Yunnan Province, in China.
- SUMMARY
-
Published journals
Biorxiv
-
Publish date
2018.07
-
Sequence Method
PacBio, Illumina
-
Assembly Method
SOAPdenovo(v2.04)
-
Genome Size
2359.97 Mb
-
Genome Coverage
110x
-
Scaffolds
179913
-
Contigs
616542
-
N50
16420
-
GC%
34.68
-
Bioproject
PRJNA299863
-
Data
-
Reference url
Reference
Fan, G., Fu, Y., Yang, B., Liu, M., Zhang, H., Liang, X., ... & Shao, L. (2018). Sequencing of Panax notoginseng genome reveals genes involved in disease resistance and ginsenoside biosynthesis. bioRxiv, 362046.
- SUMMARY
-
Published journals
iScience
-
Publish date
2020.09
-
Sequence Method
Oxford Nanopore, PacBio, BGISEQ-500, Hi-C
-
Assembly
BGI_Pnoto_1
-
Assembly Method
Canu v. 1.7; SmartDenovo v. 1.0
-
Genome Size
2263.67 Mb
-
Genome Coverage
84x
-
Scaffolds
13292
-
Contigs
31960
-
N50
145000
-
GC%
34.05
-
Bioproject
PRJNA632433
-
GCA Number
GCA_014296215.1
-
Data
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/296/215/GCA_014296215.1_BGI_Pnoto_1/
-
Reference url
https://www.sciencedirect.com/science/article/pii/S2589004220307306
Reference
Fan, G., Liu, X., Sun, S., Shi, C., Du, X., Han, K., Yang, B., Fu, Y., Liu, M., Seim, I., Zhang, H., Xu, Q., Wang, J., Su, X., Shao, L., Zhu, Y., Shao, Y., Zhao, Y., Wong, A. K., Zhuang, D., … Lee, S. M. (2020). The Chromosome Level Genome and Genome-wide Association Study for the Agronomic Traits of Panax Notoginseng. iScience, 23(9), 101538.
- SUMMARY
-
Published journals
Plant Communications
-
Publish date
2020.09
-
Sequence Method
Illumina, PacBio, Hi-C
-
Assembly Method
Canu v1.5
-
Genome Size
2660 Mb
-
Genome Coverage
325x
-
Scaffolds
219
-
Contigs
5360
-
N50
1120000
-
GC%
34.45
-
Bioproject
PRJCA003451
-
Data
https://bigd.big.ac.cn/search/?dbId=gwh&q=GWHAOSA00000000&page=1
-
Reference url
https://www.sciencedirect.com/science/article/pii/S2590346220301449
Reference
Jiang, Z., Tu, L., Yang, W., Zhang, Y., Hu, T., Ma, B., . . . Gao, W. (2020). The Chromosome-Level Reference Genome Assembly for Panax notoginseng and Insights into Ginsenoside Biosynthesis. Plant Communications, 100113.
- SUMMARY
-
Published journals
Plant Biotechnology Journal
-
Publish date
2021.01
-
Sequence Method
Illumina, PacBio
-
Assembly Method
NextDenovo2.2-beta.0
-
Genome Size
2410 Mb
-
Genome Coverage
100x
-
Scaffolds
5218
-
Contigs
2993
-
N50
1450786
-
GC%
34.43
-
Bioproject
PRJNA608068
-
Data
https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=608068
-
Reference url
Reference
Yang, Z., Liu, G., Zhang, G., Yan, J., Dong, Y., Lu, Y., Fan, W., Hao, B., Lin, Y., Li, Y., Li, X., Tang, Q., Xiang, G., He, S., Chen, J., Chen, W., Xu, Z., Mao, Z., Duan, S., Jin, S.and Yang, S. (2021) The chromosome‐scale high quality genome assembly of Panax notoginseng provides insight into dencichine biosynthesis. Plant Biotechnol J, https://doi.org/10.1111/pbi.13558