Species: Allium sativum

Accession Number

SRX3145702, GSE102157

Sample

Sample Location: 102 landraces were planted in the experimental farm (28°11'49''N, 112°58'42''E) of the Institute of Bast Fiber Crops (IBFC), Chinese Academy of Agricultural Sciences (CAAS), Changsha, China, on 18 September 2014.

Sample Part: bulbs

Sequencing

Sequencing platform: PacBio RSII, Illumina Hiseq 2500

Sequencing data: PacBio RSII: 8,074,127 reads. Illumina: 6,048,800,000 raw reads.

Assembly and Annotation

Assembly software: SMRT analysis software, CD-HIT

Assembly result: 36,321 transcripts, length ranged from 120 to 4,803 bp, and the average length was 1,500 bp.

Annotation Method: NR, NT, KOG, KEGG, GO

Data Url

https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=400665 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE102157

Reference

Chen X J, Liu X, Zhu S Y, et al. Transcriptome-referenced Association Study of Clove Shape Traits in Garlic[J]. DNA research, 2018, 25(6):587-596.

Reference url

https://academic.oup.com/dnaresearch/article/25/6/587/5066954?login=true

Download

Download